 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034107 Open in IMG/M |
| Scaffold ID | Ga0335037_0002092 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10711 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (73.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015601 | Metagenome / Metatranscriptome | 253 | Y |
| F024558 | Metagenome / Metatranscriptome | 205 | Y |
| F054039 | Metagenome / Metatranscriptome | 140 | N |
| F061859 | Metagenome / Metatranscriptome | 131 | Y |
| F066790 | Metagenome / Metatranscriptome | 126 | N |
| F078723 | Metagenome / Metatranscriptome | 116 | Y |
| F080054 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335037_0002092_10301_10582 | F061859 | GGA | MTVEALLIIIGLCLVACYLVYRWQESVVDMAIPPYQEPVKPDMVDQWKAATKADTLDNIDSWNMKIGDKIWHKADATPLNPKAAWPFPSGDKP |
| Ga0335037_0002092_1102_1263 | F066790 | GGA | MLSNLMQRVRDMFKTYTLEDFISESDPKDYKDIQRLEAVWQNYQERKLFNNCY |
| Ga0335037_0002092_2763_2966 | F015601 | GGAGG | MAGYTKQFLIDAFMSRYVNCDHLSIEKLERLEIMANDLYDRVGRDSFRVYACLDAEAIREYKNKVTA |
| Ga0335037_0002092_4520_4753 | F054039 | GAG | MTDISPNYKRLAKILNKTRKSLTQTCHELGIDVDDIEDHVLVQVIDQCSHCNIWSQQLVKDLDYNPVCPTCVRLTGL |
| Ga0335037_0002092_5209_5409 | F080054 | GGAG | MSTQLNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLHKKKTIPRLFMPKLKDNHA |
| Ga0335037_0002092_5558_5875 | F078723 | N/A | MSYDILINNLVNGESVTVTKPDGTTYLEPRPPNRTALAAAKALQNLQNQLNFGTSAINQLTKERNELVDFITRLQEQNKRLQHEINSKTSATASSAGNSDSPTAG |
| Ga0335037_0002092_8566_8940 | F024558 | AGGA | MIVVIYTEDLEPIIPIDLPLWLLDRLEQEGAVRVAVSKPMGFRGERIPVGMVGNEDMPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLTPEWLPGQRAPIQLYLNTVRKMHDELIKQIRKNQS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |