NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0003542

Scaffold Ga0335037_0003542


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0003542 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8257
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y
F045061Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0003542_1226_1855F001897GGAMAYFMDGYEGNKERTDRWIATFPQGRLEAHIVEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGNTEKATKEVMALVKSETPAADYDYWSTKHGDVPSYQTAAEAEQAGTPSFGSSEDSAWSANAVPSCSHGSMRWNQSKPDAPKSWGGYFCSEKIKEKQCTPRWYVLRSTGTWEPQV
Ga0335037_0003542_3309_3587F045061GGAMAITSKNINLFQLDQELGGQGLNGDFNDPKKKVITVADNSTITQAELEAAIAVHNAGPTDAEVTMLNREQGMAKLKELGFTDDQITALLSGV
Ga0335037_0003542_396_578F003182AGGAGMHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEELSQ
Ga0335037_0003542_559_1008F000903AGGAGGMIAAIQHCHDRSADHNSRIVKDISWFAYVAQMGESMAAEYVVAKRLGYEYTPGITWDKSKADVGEHIEVKWSANPASNLWIQDSDRHDRDIAVLVTGSSPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPAI
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