NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0086215

Scaffold Ga0335037_0086215


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0086215 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1701
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010898Metagenome297Y
F033698Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0086215_1068_1700F010898N/AMDKINIYINSKNRDLSEKISNFTVRIPQNLLRLSQGEYFTLNVNGFYCYNSWFNCIDGFNNEFQLIIKNINDEIVETYNYKLNDGNPNVNDVKSNLNGLLINKVLVSYDKQRNKFIFKRSLPVSTQNYTMYLKIINSEDFLGFYKSDRNIEILLPYLQNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVP
Ga0335037_0086215_340_1062F033698N/AMKFFRYKQVARLNFSGIDDELNDVDSSYYNTKQKLFDNDEINTKLLRFRINNLRDLKLSQNAKIILESLYLPSINDATLRMKHDPKIVLRFKNVSDSNCYDSSNDNNYPIIFAYSVQSRQQRVVSTNTTTLAGAINTYNNNIEIRNVYDNGITFFNPSPDKLYNFTISNTFTNNTVFEFEIIYEMDNGVNIVRVDDNTEFYKFQCSFIICDVDEEELISNDSNTVDLSKFKPHFPLKKSH
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