NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335050_0060169

Scaffold Ga0335050_0060169


Overview

Basic Information
Taxon OID3300034108 Open in IMG/M
Scaffold IDGa0335050_0060169 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2332
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005781Metagenome / Metatranscriptome390Y
F083920Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0335050_0060169_1547_2185F083920GGCGGMATYLTASKQLLNNYACISTLGPTDIQVGDSIVVASIGAPFNGTFTVLSCPQYEYTGIDSTTGEWTFNENVPRANQVLYACTGDAVEYSAFYTGTVSFTPTCTWVTVANLVTYLGVSITNPSDDYTLATQAVSAGNQFCSRRRAEAGYNDNLSSSPSGDVLLGTIMYCAALWRSRGSLENVFASFDNMGTAPQQSMTPIVKQLLGIDRPAVA
Ga0335050_0060169_2185_2331F005781GGTGGMPAPYNDLFNEALDDLSATLTAVTGLRVVNDPTKLVPNCVFITAPSFTT
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