NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335050_0076173

Scaffold Ga0335050_0076173


Overview

Basic Information
Taxon OID3300034108 Open in IMG/M
Scaffold IDGa0335050_0076173 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2008
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003378Metagenome / Metatranscriptome490Y
F020354Metagenome224Y
F054850Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0335050_0076173_229_501F003378AGGAGMDQDMKIKPNATAARFFDLGQRLFSLFLSTALPAITTGAVIGVSVAKSAIMAGAMSVIAVVQKLAAASVDGGLTSEEIKEAFGTASKKKK
Ga0335050_0076173_2_232F054850AGAAGMNAKNWPIVKVTLPADLKGVKPGEVPAHLLRDVQPYGKLHWRAADAYHAMRDKAFADGIKPFKPVSEGDTYRSLAFQ
Ga0335050_0076173_479_667F020354AGAAGGVFAKLRDELFALGFTLGASAITIMTLSGTVQNWALIFTFLSLALHLAGVLTKGEEDGSGHEN
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