Basic Information | |
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Taxon OID | 3300034108 Open in IMG/M |
Scaffold ID | Ga0335050_0076173 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2008 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003378 | Metagenome / Metatranscriptome | 490 | Y |
F020354 | Metagenome | 224 | Y |
F054850 | Metagenome / Metatranscriptome | 139 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335050_0076173_229_501 | F003378 | AGGAG | MDQDMKIKPNATAARFFDLGQRLFSLFLSTALPAITTGAVIGVSVAKSAIMAGAMSVIAVVQKLAAASVDGGLTSEEIKEAFGTASKKKK |
Ga0335050_0076173_2_232 | F054850 | AGAAG | MNAKNWPIVKVTLPADLKGVKPGEVPAHLLRDVQPYGKLHWRAADAYHAMRDKAFADGIKPFKPVSEGDTYRSLAFQ |
Ga0335050_0076173_479_667 | F020354 | AGAAGG | VFAKLRDELFALGFTLGASAITIMTLSGTVQNWALIFTFLSLALHLAGVLTKGEEDGSGHEN |
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