NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335050_0092741

Scaffold Ga0335050_0092741


Overview

Basic Information
Taxon OID3300034108 Open in IMG/M
Scaffold IDGa0335050_0092741 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1764
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023036Metagenome211Y
F039471Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0335050_0092741_1175_1546F039471AGGTGGMDEFYLLVTATRKQGKGSKLRQTQKKATRITRVAKCSFRYDCSEDGFIVGRWWKIEVFDNPITHMMDLIFVGLDSDPGIRAAEALAERMVSGLGLASGVKWEASCGPIDAEDAALLRIELEVV
Ga0335050_0092741_877_1182F023036GAGMESGDTYRQHRIPRKMSNPTVNVNTTQPADWAEFIRNAASVEGIEVSAFYGYAAVDRAIRVLGMDPADTWAILSERKRGRPVHYDPKDAPAVKRKRGGLNG
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