NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335051_0010304

Scaffold Ga0335051_0010304


Overview

Basic Information
Taxon OID3300034109 Open in IMG/M
Scaffold IDGa0335051_0010304 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5173
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019137Metagenome / Metatranscriptome231Y
F020905Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0335051_0010304_1719_1976F019137AGGMAKLKIVRNDGSVLEGEITPAVEYSFEQYAKKGFHKAFRDDEMQTSVYWLAWEVTRRSGESVKPFGIDFIETLKSVSVEDSDPLS
Ga0335051_0010304_4747_5172F020905AGGMPWLPEWRVTINDDVYTNVTAVSFASGRLDIDRQPTAGYCRVQIINTDGSPFTINVSEAITLELKNSSGTYVTVFGGEVSDFSIAVRSPEETGFITTGTVLGVGSLARLTKAVYNTALAEGLDGAQIAAILGSALSLPWSEV
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