NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335051_0011312

Scaffold Ga0335051_0011312


Overview

Basic Information
Taxon OID3300034109 Open in IMG/M
Scaffold IDGa0335051_0011312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4946
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012965Metagenome / Metatranscriptome275Y
F073497Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335051_0011312_2049_2912F012965AGGMTLATAVANVAAEAGYTVDSNIVTSSDVTTKQLLAIAQRINREIGDQYPWPKLYASGSITLVGGQATYSLPAAFSWYHYETFWNSSNRWRILGPMSPQEYAEVRGYGLNTTVYQRFQIRGVTNSELLISPTPSAAQNNNIIIFEYVADRSARPRTWTTSTTYGVNSYTFYNGNYYETASGGTTGATPPTHTSGSVSDGGVLWTYYNGPYSEFLADTDETVFNQKTLELGMLERFAEIHGLTGIQPRYMTQMHEDYSRQQTSKIIYAGGHTRAELFARSGTAVFGTWI
Ga0335051_0011312_670_954F073497N/AMGLGMPGELAGVVTDGVQTSVVNATAAGVRTKQAINNVNDTTPTAAELTTSFGTPASVGSGFVGVVKDADADTNCYVVVSNGTSYFYLKFTKAT
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