NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335055_0000269

Scaffold Ga0335055_0000269


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0000269 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53251
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002501Metagenome / Metatranscriptome553Y
F003408Metagenome / Metatranscriptome488Y
F005000Metagenome / Metatranscriptome415Y

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0000269_28822_29010F002501GGAMMTCQRCKGRVFIDRVFSQKLHMELFCVMCGKRWMINKETNKLAKWLEKMEEKYAKLFFISS
Ga0335055_0000269_31182_31484F005000N/AMNHKNIKRFQINVEFHDDSDMIRIKAQYESLLSQDMRGKGYAKVLDIDTNFSVQFTGETWSFLMTMYGVYVGKRKAWQSEGITQGKLIPRIMRQHTLSQL
Ga0335055_0000269_4127_4375F003408AGAAGMPELVQTFKAMQKTEEDKRRFLASIQGIDLNENKEEEGTTFEDIQRRVFGIEASGDDVVSLQGTFAAQAGFGIGAGLGYSKE
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