NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335055_0000465

Scaffold Ga0335055_0000465


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0000465 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29610
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (29.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010908Metagenome / Metatranscriptome297Y
F014228Metagenome264N
F015723Metagenome / Metatranscriptome252Y
F015858Metagenome / Metatranscriptome251Y
F024249Metagenome206N

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0000465_11481_11708F010908GAGGMKQILSPFQKYECFSVDGIDYLVTDVTIIQDKDDNLVEWASEMKFKRLSDHKHFTMPMTKILTNHKEGRAKRCKC
Ga0335055_0000465_13027_13464F015723N/AMPKIISITPTGMWQDLHKLEIRFDTGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGGYAPSAPSSPSFAAKTDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHVEHFANRNDPF
Ga0335055_0000465_14779_15186F014228N/AMNSKLNPNRLAMWTILLTATLAALSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKEKKQRGWTLEGAAVTLGLILVVAYFIKKWIDKLVE
Ga0335055_0000465_18281_18601F015858AGAAGGMANFISWGVVYCSTWFGQVDETTLSIQNQSAPPCFAPANEFVAQFETRVLNDGGTFEGFDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEDCLIDQLFILN
Ga0335055_0000465_8986_9312F024249N/AMIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSIYGEAPKLADEIYTKWLNWATTVASEE
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