Basic Information | |
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Taxon OID | 3300034110 Open in IMG/M |
Scaffold ID | Ga0335055_0000465 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29610 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (29.79%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010908 | Metagenome / Metatranscriptome | 297 | Y |
F014228 | Metagenome | 264 | N |
F015723 | Metagenome / Metatranscriptome | 252 | Y |
F015858 | Metagenome / Metatranscriptome | 251 | Y |
F024249 | Metagenome | 206 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335055_0000465_11481_11708 | F010908 | GAGG | MKQILSPFQKYECFSVDGIDYLVTDVTIIQDKDDNLVEWASEMKFKRLSDHKHFTMPMTKILTNHKEGRAKRCKC |
Ga0335055_0000465_13027_13464 | F015723 | N/A | MPKIISITPTGMWQDLHKLEIRFDTGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGGYAPSAPSSPSFAAKTDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHVEHFANRNDPF |
Ga0335055_0000465_14779_15186 | F014228 | N/A | MNSKLNPNRLAMWTILLTATLAALSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKEKKQRGWTLEGAAVTLGLILVVAYFIKKWIDKLVE |
Ga0335055_0000465_18281_18601 | F015858 | AGAAGG | MANFISWGVVYCSTWFGQVDETTLSIQNQSAPPCFAPANEFVAQFETRVLNDGGTFEGFDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEDCLIDQLFILN |
Ga0335055_0000465_8986_9312 | F024249 | N/A | MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSIYGEAPKLADEIYTKWLNWATTVASEE |
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