Basic Information | |
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Taxon OID | 3300034110 Open in IMG/M |
Scaffold ID | Ga0335055_0000544 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25787 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (7.69%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006142 | Metagenome / Metatranscriptome | 380 | Y |
F017303 | Metagenome / Metatranscriptome | 241 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335055_0000544_1167_1850 | F006142 | N/A | MKRQNKLILEFTEFNLQRMNSDSVQASTHVDDPSLSINAFDKNQDMIRQAMSRINDIMYNLKGTNAYKALRSKLALEEQDIKRLKVLRIVKSTSLKYDIYIAFTIGEEEYWGVIEDMMSDSPDFTSEVFKDADLYQPKEWIIKIKGLIIKTLKTWLKPEPGMYKLLNDEVLCYSVETGKQLRMEKGIEVELIRSHNDKIVIKHNSDVYNLVGDNYIYFNWWFEKLEE |
Ga0335055_0000544_8245_8640 | F017303 | N/A | MIIKNLQLTNDTIGALNTLIELDINATVAFRLTRIIKELSSIVEDKLKMEKKILDKWVEKGEDGNPIVPTGEDGNPIEGTVNITNVDEFTKEMSQLMEVETEIPFEKIDFEDLGLTTAKVKDLIKLEFLFN |
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