NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335055_0000544

Scaffold Ga0335055_0000544


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0000544 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25787
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006142Metagenome / Metatranscriptome380Y
F017303Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0000544_1167_1850F006142N/AMKRQNKLILEFTEFNLQRMNSDSVQASTHVDDPSLSINAFDKNQDMIRQAMSRINDIMYNLKGTNAYKALRSKLALEEQDIKRLKVLRIVKSTSLKYDIYIAFTIGEEEYWGVIEDMMSDSPDFTSEVFKDADLYQPKEWIIKIKGLIIKTLKTWLKPEPGMYKLLNDEVLCYSVETGKQLRMEKGIEVELIRSHNDKIVIKHNSDVYNLVGDNYIYFNWWFEKLEE
Ga0335055_0000544_8245_8640F017303N/AMIIKNLQLTNDTIGALNTLIELDINATVAFRLTRIIKELSSIVEDKLKMEKKILDKWVEKGEDGNPIVPTGEDGNPIEGTVNITNVDEFTKEMSQLMEVETEIPFEKIDFEDLGLTTAKVKDLIKLEFLFN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.