NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335055_0000604

Scaffold Ga0335055_0000604


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0000604 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23575
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (9.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006895Metagenome / Metatranscriptome362Y
F008248Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0000604_22042_22935F006895N/AMIGDRFNFEDVFFRDLTVCVLDTLEGQVKWVNKFTSGDKFVEVPFYYSMTGDERFLLDSFTDDIVSGDSTGNGRYLELNTDIIPRGHLTMKSFAIRSDEFANPNVWLRTVVENEVEIKKVLGRIRAVPVTVSYDLVITLSSEIDSFKCSQAIMDTLWIYKFMYFEHNFMNIDAVILMPDSNSIEMTREKNLTSDNSIKMTVSFEVQTYYPAFRRDRVDFPGYTKENSGMSDMNGYTIEGGYSDFFNNVRGGSTAGESNAGFFATPKRTRWFNNILRSREQSSRRYDNPNGDLGNKDK
Ga0335055_0000604_23007_23573F008248N/AMKNLKLELFNFKKDLSLDQEEISTIVEGHMNACNQHSEKTIITSLNERLKPYTYDKGVKMLLEGLNDDMATFELLYELKNLYGVLNTRNQGELYRQPINVLLQTINLESDQDRMSKILNELAVYDWVPEIKVFVHNLTKSPEKRSNLLSGGNGESIFTVVEQVEEGHVALVRDSWFLLTENSIEKTLLE
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