NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335055_0000726

Scaffold Ga0335055_0000726


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0000726 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20447
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (71.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001043Metagenome / Metatranscriptome794Y
F001460Metagenome / Metatranscriptome690Y
F004051Metagenome / Metatranscriptome455Y
F011394Metagenome / Metatranscriptome291Y
F023851Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0000726_1765_1932F004051AGGAMTVKNKTYQVGDLFTTLKSNVTGVIKEINPNSSGSVRVLLETENGDRWTTVVLDK
Ga0335055_0000726_19633_19782F023851N/AMCETCIISKFEPRWVIILAGRQVGPDSVKEFILKKRYCGNDISASELLV
Ga0335055_0000726_20047_20367F011394AGGAMTFIDRDKDHFKHGMNLWTGEPNKPVFYSKEMALKIRELYRPSKDLKMDIVKYPEFLTIRLYESNFKHYDGLMKEQVINYVQMVKNIIESYGVRCELEGVPDERIR
Ga0335055_0000726_5546_5692F001043AGGAGLSDYKEGFQDGYKFGREEIIEKLREIDIHDIDTWLLDRLADMIEGGKL
Ga0335055_0000726_6310_6522F001460N/AMGRICNRGETIMLGYSGYDIDRMTDAIHDAKLFYLRTPSDLIDKEPLKRDLEEAVSFLLGLVAEGYFDED
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