Basic Information | |
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Taxon OID | 3300034110 Open in IMG/M |
Scaffold ID | Ga0335055_0000726 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20447 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (71.93%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001043 | Metagenome / Metatranscriptome | 794 | Y |
F001460 | Metagenome / Metatranscriptome | 690 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F011394 | Metagenome / Metatranscriptome | 291 | Y |
F023851 | Metagenome / Metatranscriptome | 208 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335055_0000726_1765_1932 | F004051 | AGGA | MTVKNKTYQVGDLFTTLKSNVTGVIKEINPNSSGSVRVLLETENGDRWTTVVLDK |
Ga0335055_0000726_19633_19782 | F023851 | N/A | MCETCIISKFEPRWVIILAGRQVGPDSVKEFILKKRYCGNDISASELLV |
Ga0335055_0000726_20047_20367 | F011394 | AGGA | MTFIDRDKDHFKHGMNLWTGEPNKPVFYSKEMALKIRELYRPSKDLKMDIVKYPEFLTIRLYESNFKHYDGLMKEQVINYVQMVKNIIESYGVRCELEGVPDERIR |
Ga0335055_0000726_5546_5692 | F001043 | AGGAG | LSDYKEGFQDGYKFGREEIIEKLREIDIHDIDTWLLDRLADMIEGGKL |
Ga0335055_0000726_6310_6522 | F001460 | N/A | MGRICNRGETIMLGYSGYDIDRMTDAIHDAKLFYLRTPSDLIDKEPLKRDLEEAVSFLLGLVAEGYFDED |
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