NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335055_0021910

Scaffold Ga0335055_0021910


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0021910 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2974
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003904Metagenome / Metatranscriptome462Y
F008613Metagenome / Metatranscriptome330Y
F016151Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0021910_1370_1756F016151N/AMTKTQLKQLIKECLNEIDFAPGFRPNEDLTIVSTVTGSDVDHIKTYLLELHRVLKANFGDDVQFEENLKKSILPNKDKQVEITFTIIDIIDSLMSKTVRENLQDIHEKLTMWSINEGLVINFNFKIKR
Ga0335055_0021910_1798_2418F003904N/AMNSVIIKIKSYLWFVLLPVAVITLLSISSLKDIEQGYTRFKFGRDITLYLRKSTDLLTYLGTAYTTTSDKKFLNQFNEHLKEREKYFNDEILTNKILTQEELREFRKGLDISSDLAKDVENPAFEKMDNKAFFSDKYLDYKRRIIENNQNFRTLINDSSEKIIKDEIVKLNIYLYTLCFIILGMVYLIKQENKPVTKIRKRIKRKK
Ga0335055_0021910_3_515F008613N/AKRPPTYTFSGVEDLLKDVDQWRGKEGVVVYSKNDQMLHKVKGAWYLALHHMKSELSNIEKVLDVWLEQGMPDYQTFYNYIFTTFDFELAEQIKGTISRIVDGKKEVNKIVDGMNNFVNNRLRSLPSRKEQAQLVISSYGETNRAAFVFKILDNRPLGKDEYKKLLFQVLK
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