NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0019394

Scaffold Ga0335063_0019394


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0019394 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4379
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021096Metagenome / Metatranscriptome220N
F040589Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0019394_1392_1952F040589N/AMSIAQTAILASALKGGSSTPKSTPTSIADSIAQKPLQWLVVTGAVVYFGGKFIKNIIPSGENLRKGEAETATTSDNPWSANTFMAQKIPANTNLLSSAGASQQAKKVYDALNTYFVDDADIVVGVFAALPSKVQVAQVVKSFEATYNRNILEYLKSGKKTFDFGTGGISDALYNRIIENVKRKPKF
Ga0335063_0019394_2784_3266F021096GGAGGMAALISPIIQYFLGNNLAKDYTAIEGEMSTLVTLNFPNTGNYQQSYYMASQTMLDGDNCTITALEIVPSTELTVLPTGQTNVDQSILPNGVFYVANLKRQIIAQIPLTTMVRTNNGGKPTFTFFNDQVWQNCYVEFTSTGFTTTITPLTFRVYYVNKQKN
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