NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0091426

Scaffold Ga0335063_0091426


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0091426 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1857
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078706Metagenome116N
F083714Metagenome112Y
F086839Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0091426_1_309F083714N/AMVFNGHTIQDIDALDEATMNEITVMYADGLVGNRGLLNMQGTLVAGVFNYLRASGSQPYTLKSVLGSAYEYFYGIEKADPSESLLTFMSQAPDFKMDRFQGK
Ga0335063_0091426_342_812F078706AGGAMSKLGSALGKKYEENRLSVLTRSFELGDHTFKVRVPSVQEIEAIYNYFKNPNEEKVELEYQRMLKEFDGLKEKEGVEIKDNDMVIDGRSMRETAKNKHILQHRIIEYIKFLIPETGSLEDITYQDVETEFPLSVQMTLVEKINEVISPEYKDIKSK
Ga0335063_0091426_822_1376F086839AGGMSVKFAVNGLKETLDAFKEFQEQFGDKDAKSKVLIPAVREAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYVTPKDSVISLVSSRPIPKKVKQQFQSQYGDLKGKEYKKARRKFYTEAGVMFDARAIANEFGTGKMSAKPFMRVSLESQAQMVATKLGMIIKQKMDAYKAKKLTT
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