NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0097241

Scaffold Ga0335063_0097241


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0097241 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1786
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002357Metagenome / Metatranscriptome567Y
F003825Metagenome / Metatranscriptome466Y
F013521Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0097241_2_157F013521GGAMTEFKCNGCARKTEFLWLDAIDMPDGFKVYQCMDCGCVGVKNITEQIDRIPD
Ga0335063_0097241_524_694F003825GGAMGYIAFINGKGIQVVLDDNGVHLEESIIKCEACDDDRVFKDGTCFRCHELINREVD
Ga0335063_0097241_695_1366F002357GGAGMMAFNLNDYEDVATLNKWFISNFPKGRSDISVISHDAKDGYILVQATLWRDSIDDKPAVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVDAEPNQYEKKLKERRYGAPGTKSAAIEDALRASFAVDNKVDDPQQWTIADAVDAIGQTQPKEPPVCCSAGHILKTGVSKGGKPYFGYVCKASNKDHARWAKMSAKGSWFFEGIE
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