NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0171503

Scaffold Ga0335063_0171503


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0171503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021095Metagenome220N
F061648Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0171503_1_231F061648N/AMSVTLIAYPTADYTTDLQAWNAFNDRADADGATSREDACYGCLFSTFATLYDQPELAYVLDTMGGTDIAVTYSIGDI
Ga0335063_0171503_228_1241F021095N/ALPSTNFGFFDVAKVVETLIAPTKPTLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTVSGVMGFAGNLEQLELQDWSLSPYFRIGSSFNSVKPLTTPSAFTVYRGGKAWLAINATKFSTVSANDTYLVSGRVAYKSVNYDFAVSPSLSGTTDFNIQRFGCGPAQLSGTIAALSGAVEGDSYTVQFLGNQGLGSVITTFTFGPCERFNSIPVHFQNKYGGIDSYTFTLKNRKRANITRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
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