Basic Information | |
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Taxon OID | 3300034112 Open in IMG/M |
Scaffold ID | Ga0335066_0375686 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 782 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CRM01 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007919 | Metagenome / Metatranscriptome | 342 | Y |
F036765 | Metagenome / Metatranscriptome | 169 | Y |
F047649 | Metagenome / Metatranscriptome | 149 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335066_0375686_109_294 | F007919 | GGGGG | MTAKLKFTQVSRVICPKTGVHYLDAIDENGIHWVAQQEIGVERWITYKEVWKRDPQQPLD |
Ga0335066_0375686_291_617 | F036765 | GGA | MTIKTTELLKLFAKAQKLQLSVEVREDKDSDYVIRIYEMFRQEGFDEKVIIDQNGGSSWNKGSYSFDAMMDVLDGMLEEKLLEEIKARKRQELIARLTDEEKELLGVK |
Ga0335066_0375686_614_781 | F047649 | N/A | RTYEHQCDFDAKNRAEKASQDYYNKWINLRKEVRNLVREQNLTITPEFSKLIGLK |
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