NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364945_0017689

Scaffold Ga0364945_0017689


Overview

Basic Information
Taxon OID3300034115 Open in IMG/M
Scaffold IDGa0364945_0017689 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 29_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1854
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007180Metagenome / Metatranscriptome356Y
F016700Metagenome / Metatranscriptome245Y
F022605Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0364945_0017689_319_570F007180GAGVQPELTIIALSLWLIVFLGVTCVVYSLVSMWKENRFGWPLRGIIGFTVAIIGSCAVIALLAGYVQKAKSSEKVSSRVEAVTVD
Ga0364945_0017689_59_313F016700AGGAGGLSLASCFALFLGLAVATQSQAEDYYIYQAPNGELVISNKEPPPGSKIIKQLPGVTDKEVPQAQEPGKTPPNVQTESSPKSPKNK
Ga0364945_0017689_949_1245F022605N/AMKECSLLNGSFIPALPAYEYGGYIISAWARPEFTNGSTSVGIVYEQGQFGSIIQVQRIEGELFESKEQADQHGLELCKKWIDKQNNAKKEMQKRAAIG
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