NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0364945_0021913

Scaffold Ga0364945_0021913


Overview

Basic Information
Taxon OID3300034115 Open in IMG/M
Scaffold IDGa0364945_0021913 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 29_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1683
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056700Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0364945_0021913_1_1674F056700N/AKDDTDPLVSARAVSAWLRHLPTQDVIARQHQVMRIFDGMRQSARPTDLHRVAAIQFLDTALGADRRQLVKQYVENIDRSARVADRGWQAAQEMSQGFVYAYQTALEQALAESSNPRWKPMIPQVFARLLHYHGTDAKLRSFRHERWIPAKWTNLHQLYSRATELGVARIAVALPSAGHGAMQWSTEQEYVYALLIQQLNMGSLSPSEIDWASAQMRAWGRKLEFEAVPRSSEGFYVDLASKRGLVRRTGNESGPTLHFLDTTPLADQLERAMHALRQNDLGEPGAAAAVNLQRIAILEKVRPVVAPNLHGDLRRSPRTPVTVAAKVRVGLARICVELTPREIVEPANDSDVGNEQIEVFAVANRPRTRHHVPDEHDSLAASIVPVGDQAWQVKDRSVAGLRISASGGIGQSLVLGALVAIRQSDAVDWVLGAVRRLNKLSNDEVEAGVSIIADRIVPIKVNARRAAKEDLGMVVNGVDVSMMGSRFDALYLPPPSRPEKPLTVKTLIVPTSEYADGRNLILTTGHSVYTIALRHLVEQRADWSWAAFQIIDKKPTGY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.