NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0000351

Scaffold Ga0335068_0000351


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0000351 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37575
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (76.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F012451Metagenome / Metatranscriptome280Y
F012663Metagenome / Metatranscriptome278Y
F035228Metagenome / Metatranscriptome172Y
F040602Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0000351_14466_14672F001396GGAMFSSVWVPIIVAIIMGPVVVVLQKLRKENTDQHAEARILLRTIGGKVDKVASKLDQHIGWHDGKKDSE
Ga0335068_0000351_14679_14900F012663N/AMELLCDTCQKLFFSEQMPHRGSICFKCHIKGVRLGFTYGQEDFHGPTIRERQRQTVEQAKINGYNAEPVTNWM
Ga0335068_0000351_21146_21454F040602AGGMATTNDAMYISLKAMYPTAGDTLGDLLYAHWSAEGLGFRGSLQFDYYVAQESVSEATGTTWGDLANSFWSDPDFVVSNLENESGNDLLLEDGSFVLLEVGNG
Ga0335068_0000351_33608_34123F035228GGAMAGRQASETNNSNKRVNQSDYDIAPKQYDFHTDLRYGKQGEKLVEEFLETLSGGAFEVKTDRYRNGRMVLEMEHNPRRKVDEEGKALWKPSGLAVTKARWWVYVYTLDGSFIIVDVQRIKRYLKVNKDRFNPKKYHDFAHRSSNPSKGYLLQPEDVMDMMINPAYDTVPKL
Ga0335068_0000351_6751_7467F012451GAGGMAYAQMTAAALRQTVRDITDLDAEDLPDSLVNLYLRDGYYRILDLQKRWAFLEKTFTFNTVAEQRAYTISAFTADPIGQVVSIVDNNNVGYRLDMVGHDMAEQTYIGSYDTSGDPLFYSIWEGKVHLFPKPNNVRTLVVRAYREPIDWITTEGNVDASPNLHFALVYYACSRVYQRLEDTLMSGEYKRAFDEAVTLAATNINKPNSHAHLRLSAGQTSGRPTFNGWMQTMGKNLKENQ
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