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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034116 Open in IMG/M |
| Scaffold ID | Ga0335068_0000570 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29007 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (12.24%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002018 | Metagenome / Metatranscriptome | 603 | Y |
| F002391 | Metagenome / Metatranscriptome | 564 | Y |
| F003818 | Metagenome / Metatranscriptome | 467 | Y |
| F022635 | Metagenome | 213 | Y |
| F028780 | Metagenome / Metatranscriptome | 190 | N |
| F030696 | Metagenome | 184 | Y |
| F040591 | Metagenome / Metatranscriptome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335068_0000570_15444_15977 | F028780 | AGGA | MKATLDRYISTHYEELHRYTRYFCSKYNPHLTIDTVISNAYLHCIEINDNTEDVGKVKSYILNSIKRQVIWKNVDTYKDERILASEISVPDTFDDGEDLSYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKGLTTARSMAEYFNIPVTSAHYLIADIKNTLKTIHYENKR |
| Ga0335068_0000570_15961_16251 | F040591 | N/A | MRIKDEYKGKTIIKKTTLGNMTVVVDNIDVSRYRHYVSIGFGYLFEQENVSTTAPEVCIRYEGIEADEQTEAPAAEPKPKRKRKTNAKANTKRNQG |
| Ga0335068_0000570_18394_18666 | F002391 | N/A | MGTNLMGELVADMGTYIANNTTEVTKTIDAIVVLQDTVFTSIKVAGTDVKSTYIAATGTAVKAGAIITPINNLQFSGVQLASGSVALVLG |
| Ga0335068_0000570_19445_19642 | F003818 | N/A | MIVLHPNEEQYKALNGYTNGVHKLIFAIDGSGKYIVGLEVLNDPNFSEIREQLLELEKITYTPTE |
| Ga0335068_0000570_25676_26125 | F002018 | N/A | MISYQALVNEIIAFYNAHLQVKKVGSDFKEQLFNFATKDEKYPIVYIVPVDAIPTENTNDFTLEIYCFDIIQKDRANINTILSDCHQILMDLYLNYTFNDNDRDFDVVGFPALVPLNNDLLDYAAGWLMTITFTMDSWTDCQIPKQIGD |
| Ga0335068_0000570_26197_26565 | F022635 | AGAAGG | MANTLKKVIKDEALIDTYTLYDSVRINAKVSTEGNIRVEILAAYYFGYLNNGTATIAPFHLVKKFNQAMEMNGLIAEMYGMYVADLAQKFPILELGNLLRKRPKVIYDFVPLFGEFNYSLDY |
| Ga0335068_0000570_4875_5297 | F030696 | N/A | MNFKVTILSLIVTIFATSCGLNYHLNKAIKKGYRCDSVADTIRITSVDSFPVIVDNKIVYEYYHTTKDTIVRYKTSFVPLTRYQERIRYKLKRDTIHQVQKIEVAKYKSQKEKPAFWVLILGFVVGMGTMYLFRYSKKEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |