NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0004516

Scaffold Ga0335068_0004516


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0004516 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9301
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015061Metagenome / Metatranscriptome257Y
F061533Metagenome131N
F075040Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0004516_1524_2321F061533N/AMSNQLDGIEQKDIIKRVTGKVTKLWEAKTFTGPKGEFVIQGGEIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKIEFDQPSEEPARVAKSATPTDNPERAIDEIVDLHRFINSLVRHTYKDVEDEETLRSYVSSVFIEANRKGIRYAKSSPKVEEPKEEPKEELDPADWASAIVPSGSQKGKKLAEIGKPALTKLYEYYLEKGFTTPFAKCVEQAAEDLQLDSPADDIPY
Ga0335068_0004516_218_493F015061AGGAMSEPTPQNETSKTILEAFSFIKCEDEKLNERVHAMASLLHTAAMMVVRSESRKGEGFEAIKYLETAFLYYKESQFRKRFDKQEEEAPSIIS
Ga0335068_0004516_3232_3447F075040N/AMKETPKVKAESAEKPVVHNIDLQREIFLRLISSAAADGRFLLGNLPNANAVVKQGDHLRGVSELLANCFEK
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