NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0006272

Scaffold Ga0335068_0006272


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0006272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7760
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F028148Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0006272_2704_2949F002227N/AMKLTIQSKTNAQTIVDLFNAIITGECETQGVKPLSIYDEDKHICSITDADGNQILELIIEREEGDKLCPAFEGNPDDEKLP
Ga0335068_0006272_2946_3203F001964GAGMIRNLFAPPRFKVQISGAIGWSDLKERVVRFETLEFRARKDAEATAKELNPGEYTQGRIRVVPVEVPEDYDVYPTAERTKANHSQ
Ga0335068_0006272_807_1406F028148N/AMKTIHQVIHEIQFFDPAVRAFDAHDLPQAVRAYLHHNYRMDARLTDDEQQLVETSFEHFADNIREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPSMRLTRLEADLMREIGMDDQVSEVRDDFFSSFAHVLHRDCGIPHCDAREHWNAYARQLGDSACESIVLGGGESGRAEGIRFASEYTVKA

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