Scaffold Ga0335068_0006272

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335068_0006272

Scaffold Ga0335068_0006272

Overview

Basic Information
Taxon OID	3300034116 Open in IMG/M
Scaffold ID	Ga0335068_0006272 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7760
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F028148	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0006272_2704_2949	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIITGECETQGVKPLSIYDEDKHICSITDADGNQILELIIEREEGDKLCPAFEGNPDDEKLP
Ga0335068_0006272_2946_3203	F001964	GAG	MIRNLFAPPRFKVQISGAIGWSDLKERVVRFETLEFRARKDAEATAKELNPGEYTQGRIRVVPVEVPEDYDVYPTAERTKANHSQ
Ga0335068_0006272_807_1406	F028148	N/A	MKTIHQVIHEIQFFDPAVRAFDAHDLPQAVRAYLHHNYRMDARLTDDEQQLVETSFEHFADNIREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPSMRLTRLEADLMREIGMDDQVSEVRDDFFSSFAHVLHRDCGIPHCDAREHWNAYARQLGDSACESIVLGGGESGRAEGIRFASEYTVKA

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