NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0010513

Scaffold Ga0335068_0010513


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0010513 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5874
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F004599Metagenome / Metatranscriptome431N
F006788Metagenome / Metatranscriptome364Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0010513_3884_4534F004599GGAGMMAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNIAFGARESYIQNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMKKVNDEPIKNIYGRSGNSQVIEMALRKSFADDGKPTSEPTTWSVGDVAEALSTKPKQQECIHGLMILKEGTAKTGKPYFGYVCSAPKGEQCNAKWAVTAANGSWFFREEE
Ga0335068_0010513_4715_4954F000141AGGAMTLFKCNGCSRKTEFLWLEQLDTPEGFKAYQCMDCGCVGIKNIAEALSIPDSTISRCDQCGSWQFKNLPCHTCALVMSK
Ga0335068_0010513_77_313F006788AGGMGQPLNLQNLPAQISSGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPIIEAWNTLSATLTWEYATIVA
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