NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0015170

Scaffold Ga0335068_0015170


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0015170 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4815
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011934Metagenome / Metatranscriptome285Y
F017485Metagenome240Y
F021979Metagenome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0015170_2023_2262F011934N/AMEEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQKWRWYNHYNLTLGYKNNPYEIRARENEKLVKRAYKKSK
Ga0335068_0015170_4281_4436F017485N/AMNNKLKRKDILEGITFILMIVATIGMFCLLYEVKELRELTKGASNFRTIRK
Ga0335068_0015170_4440_4766F021979N/AMLTIENINILNSKFAGTPEWQIGEMFIGEQNYIFQIHKRVGDWTIGGVKHSELTIRLHRVKVIDRYVMETGIVKQNYHGRSAYSIENMRTINDFTSCLDRHIKNIVKQ
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