NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0042364

Scaffold Ga0335068_0042364


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0042364 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2699
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F006623Metagenome / Metatranscriptome368Y
F039641Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0042364_144_371F006623AGGTGGMNFQNYRLEPNPNSPGDWIVFGDICDNEGNLLGTFGPDGTSVFGWWVTQDAQFQLNYSNQFAVVMAQEIVNGTAE
Ga0335068_0042364_368_619F001733GGAGGMNSISIKRLVVVVIVAFVAAFTSVFGDGVRTSEAHDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVGANSLKVGK
Ga0335068_0042364_919_1299F039641N/AMIPAGYSTALKNAIQAYSYADRVAIWRTVNAADGIGGVSQHWIQVAEIRGTISNTGDTEGVVGGMIEQSGTWTLTCSPDVEVKADDRIYTSGNPQNLAPYYEVIGSDYGHTDAVSQTIALRARTNG
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