NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0046960

Scaffold Ga0335068_0046960


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0046960 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2543
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F023292Metagenome210Y
F051701Metagenome143Y
F061801Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0046960_1687_1998F023292N/AMNLDQIKEYVANQVKNYRVKDILDKFDDSEWVSLYEQINQYKPYETERRLIDWARHELDFFRYVLYKERHYEDLLIDQACIDCLRCEDTTCKERKFYVRRPQS
Ga0335068_0046960_1995_2174F061801AGGAGMKTKPIFKTQATPSYKGYDREIYMSEYTPINKEHYRRIRNCMVVSLGINIFLLLVMVLR
Ga0335068_0046960_307_516F006587GGAGGMVSKNYEGTGFLLVGIIVGIAFTWAVMEFTHLKDKNNKNLKCVQGELYEEIRPNFYVKSHLECFEQRTF
Ga0335068_0046960_506_754F051701AGGAGMQVLIELNDDQADEVLVEALKSGYAINLNFPDEPNFYEINQAFRTLLAYYMGDKECAKYLHARAKVRKNYNAKRLVEANNGL
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