NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0050077

Scaffold Ga0335068_0050077


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0050077 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2451
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F014228Metagenome264N
F039112Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0050077_1779_2138F009600N/ALKTYKVVVGKVPSLNAFYASKHWTARVKAKELVSKEVMWQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEIIFSGVLVNS
Ga0335068_0050077_2343_2450F039112N/AMTLSFSSDVYTEMVQVQQAQIQALQNKIQELQARID
Ga0335068_0050077_617_994F014228N/AMWILPMVAATLAAVSSCATVKPVLQSVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGAVLLMLILVGGYIVKRWVDKLTE
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