NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0051359

Scaffold Ga0335068_0051359


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0051359 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2415
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012328Metagenome / Metatranscriptome281Y
F100336Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0051359_1014_1313F100336GGAMNEIRDTMIHQAREDAKVKDTLILQKINASHRVAFAEKFPGQCEHILRLLTERLQAGLDKRDGVLIEDVSTWKLSPQELKDLSKALEAIYFVHKSLKAS
Ga0335068_0051359_1310_2131F012328N/AMKGNYMNRKTTTTDNTWDIAPTPQDPIDIVEEVKQEKLKSKKQIVEDKSILTHPEFDIDGLMTDFPTATELERFVYDQTGIVLNLKGRANKLKYQIAMDVLNGVEVDPKFTGSDNPYIDRTELVPIDPLKIVPERDRTLPASTEVQNTFYVPTFPHPDEEARAKDMKCHMVFRKYKNGMISYEILGPLQERPVGEKIDKFGRVRPEVIKWFDPRTGEQVVQREDGTLTPTGKKLRGTMQTYRVNKSNQWEVWVDREFISLNDSVKNNPWDLSK
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