NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0059690

Scaffold Ga0335068_0059690


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0059690 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2211
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F014137Metagenome / Metatranscriptome265Y
F022884Metagenome / Metatranscriptome212Y
F042325Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0059690_1025_1348F042325GGAMLTLKNIQKIEGKKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGVKHPKYVNFKLLRYNEFSSTLGEWKLYNDQDNGYTLLTKGLLNFKMFVGILGGQLHSLSN
Ga0335068_0059690_1359_1628F014137N/AMLTIKNIQTIIGETYNEVFNIIGVKEEMWYYEFTLGYATVGKPRYETILLHRKQTDNGMYIMEYNNKTLWLNKDEFDTIDKIIICMQTI
Ga0335068_0059690_444_710F022884N/AMLTINNLNKIVRYPIGYTFRVKSMVCGHTNYHISLIDGKGGCRDLKLNRMKGRRNRYRISHGNYSLYLKFSDIQNIDTFCKQIKRLIC
Ga0335068_0059690_704_1024F009960N/AMLILKNIEKINGYSLNVKGKGWYFKGWDNTTSEVTHFSIREVAPPHLVRKNITLHKKGRLSTDYIQNTSCYIYGIEVDGLTFYFTKEKLNTPAVFRDTIEQILNGI
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