NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0062467

Scaffold Ga0335068_0062467


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0062467 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2152
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007170Metagenome / Metatranscriptome356N
F009888Metagenome / Metatranscriptome311N
F056616Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0062467_1097_1576F007170AGGMAYEPAVIEQWIYETLSGDVTLLGLLAVDNKPDGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGAGGDDEDALCGARVFTFPNYRITVWDTESGAMSMARIQTIMNRIDTLLDNQTVTSTTPRLYVRRVSTDQTFVLSDGGRTDYGVTAVYRCLTQQ
Ga0335068_0062467_1588_2040F056616AGGAGMPFTKSFGLVGENCTVTIAFGGFQDGSPSAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSVEIELLVDGTQQTDGSPVFFNKEGYYCQIVVTPGALSAKTFVGIVTATGISIASGEAVSETATIMLGANGVSTAWTSA
Ga0335068_0062467_334_687F009888GAGGMALIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGASYSFGSGSVTLTKQYSAQGILSVLNPAAYPTAADIRLTISFTVSTTVRRFGPLQIQVLAP
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