NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0179110

Scaffold Ga0335068_0179110


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0179110 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1126
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F042325Metagenome158Y
F049619Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0179110_1_249F049619N/AMLTIQNLNKLNQKTLGKKNFYVARIEEQFSIDNISLTASQHQYKFELSNRKYAITVTLDRGPKQFVVSHYKLTSSTGKVLYIT
Ga0335068_0179110_260_583F042325N/AMLKIENIQKIEGKKIHTPHAHWVVMGIEERKNDYIIKVRFEYGTTSGVKHPKYVNFKLLRYNEFSSTLNEWRMYNDQDNGYTTLTKGLLNFKMFDGILGGQLHSFSN
Ga0335068_0179110_858_1124F009960N/AGKGWYFKGWDNTTSEVTHFSIREVAPPKLVRKNITLHKKGRIVFDNSQNKDCYVYGIEIDGLLFHYTKEKLNTPARFRDTIEEILNGI
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