NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0000199

Scaffold Ga0335054_0000199


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0000199 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33242
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (82.98%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008183Metagenome / Metatranscriptome337Y
F025940Metagenome199Y
F074583Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0000199_16035_16250F008183GGAGMSEGNEIDLVKYGVLWQKVQDMDKKVDKMERNVEELLALANKGRGGLWFGMTIVSGASALVGFLASHWKGS
Ga0335054_0000199_26434_26856F025940GAGGMATAATSRRLNLTRDQLATFLTDQQQIRQFELLFSTVDQIQVIIGTDFEYQADTAAATANEALAQISVLAQDTAVDDAVLNAKVQQALDAIPRLAQALDLLALAPVRNNIELAHDVNGILPYANQTASVRSNQVLTWLSM
Ga0335054_0000199_5894_6076F074583AGGMTKQRETPNFATWQHDTLAKFATEVYIRLQDEQAANEQLRMDLKDAMKLARIENMKDNTQ
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