 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034119 Open in IMG/M |
| Scaffold ID | Ga0335054_0014082 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4870 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F019128 | Metagenome / Metatranscriptome | 231 | Y |
| F051646 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335054_0014082_2249_3031 | F051646 | N/A | MSWQIPTQIELDIIAGKAKYQTFQTGNGGQSILPVPPNSYAVIFGYDFSPAGGGFRFNVEATLNPQLTPDLVRWFETQQISFYNGTDFYPFIHHVNTEHTVLFNSVDTVPVDVYTIDSTPIARQVYITSTNDVAITHGLILNAIPATTGAIPVTSRTPGFLTYGGSAQLIQAQTNYGPGATPLQFMQPSPKDFQDFGLGLLPGNPDNQAFATPNATNGLLAANVHLLAIGGDTFTQAAAANYYLCLHYALYSKTIPEQRG |
| Ga0335054_0014082_2_349 | F003659 | N/A | MTAADVLGRYLIAREDVPVYDFPNGTRIGTIPKGNSTAEVYSFVQRPGQVWWMFDYTIPGQTPGAYYVLQKDGRFTLSAAAGNVLVSPSSLPSVDVFPSGGIKKYALFGALGLLAL |
| Ga0335054_0014082_4059_4613 | F002259 | N/A | MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAAANHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPSAADGIAYGGLTAFSVKFDLVIANKTVLKDVACEFGGEQAFWNDGTLGSSVIDLEGVGILIPPQVEYYVVAKGYDGEARTAASIRLGCYLFGTGALLNFNTTI |
| Ga0335054_0014082_4649_4864 | F019128 | N/A | LKQPEIAAGMAGYTGAKIGQALLGSDSAIGALLAEDNSFMVSPSMYLQGEMAGEGIYASNYTLSGYDIPGL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |