Scaffold Ga0335054_0020306

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335054_0020306

Scaffold Ga0335054_0020306

Overview

Basic Information
Taxon OID	3300034119 Open in IMG/M
Scaffold ID	Ga0335054_0020306 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4058
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F002135	Metagenome / Metatranscriptome	590	Y
F024063	Metagenome	207	N
F050976	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335054_0020306_1043_1285	F000141	N/A	MHPQFRCNGCKRDTEFLWLNEIDTPEGFKAYQCMDCGCVGVKNVVEALHIPDSDICRCDKCGGWKFEAVVCHTCQLIGAK
Ga0335054_0020306_2425_2613	F024063	N/A	MTLELAVYLFIGLSMASWLLLMRIDDMKQSYYWRGRKDGFDMHRRMIQNKVKTDEVFDYDKN
Ga0335054_0020306_3525_3770	F002135	N/A	MATTRKRKKINRRRVRRTPDPLSKLEVFYIAKHEMYKAARKAGFSESVALYLMDSPESMPDWVVGDKGIIPVIPTPNEEED
Ga0335054_0020306_490_873	F050976	GGCGG	VIVEDQMFNYIKRRYVPDLERSQEFDTWDCISQQSRMYIELKARRNHYTELLIEKSKYESLTVTAMRKNYTAWYINATPLGLWAFNLTKLDKPVWKDRPMPTSTEFADKSQRIKQVGYLKIEDGIQM

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