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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034119 Open in IMG/M |
| Scaffold ID | Ga0335054_0032905 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3193 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023848 | Metagenome | 208 | Y |
| F026558 | Metagenome | 197 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335054_0032905_1960_3192 | F023848 | N/A | MIKSLIWEPLKKSCIEHFGLKDGEHINNSELTIKFPNGVFIRCKSAEQRENLRGLNVGVWVADEASLYTADTLQEITNRLRPKVGQPDTQGRLILISTPNGNGPLYDLYQLALGMPDKYIVRHMNYLQMRSGNKAFIEEQKRILSPLKFQQDYMCSWDSTENQFFYAWSKHKYTKELFDNGRDLYSFHDFNKRRMCATVAQVTRAGEKDGTIEILKSYALNDASTEDIARAIRVDFPKRRINSIIDMSGTQLNRDTTSPFGTTDRIILEKYGFTIVNNRKSNPLIADTDNTSNSFINRGGLWVRPDDNLLLEALSTYHYEDGSRKKLVKYTEQKYAHIDGLGDCVRYGIHYLFPITHDGLNLPEYVGMDSRYQRMNTPGVEHMPVSPLYPGGPTWEEIMNGSEEKDYMTW |
| Ga0335054_0032905_1_1479 | F026558 | GAG | MKNSELLQRNPIYEALYDQMLSYQYAYLGGYTFKQYVRKKRPSEDSNLWIDLINNTVAQPICRYIVDTINDVLFEPGVKRNIQFCTPAGAYIDPKNTEWADLFTLDADLNNRTITSFMESIGDLTSIFGHAWVAVDMPQAQNGNLGRPYVVGISPLDVWDWEFDWYGGRPILKYVKIKEMEDKDCYYLKCYHLGTATSPSYWRSYEVEKGSNSEKLEQAAEVTGEGVFPLGMSIPVFISYGRRDPRSIEFGVSDIDAATDAQREHYKLECEAYSALQFAHTLIRADKGIQIPVHAGAIVRASEGQVEAIPVDTGDVDMIIRKQDAILDQIETLTGLGGLRNTKNQIASGIAIIEERKTLHRLAKAKARLMEVTEELIFTYAARFMGMRWAGEVVYNTDYEAHDTNYRMALIKEAKTLVQDDPTINALISKEIIGMLAPAEQIPEYEQVYIDTIQDPKLKKLMTDTNTQVLSRDLDPSMIPNHDEHGEEGDEEN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |