NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0085050

Scaffold Ga0335054_0085050


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0085050 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1949
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023360Metagenome / Metatranscriptome210Y
F028717Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0085050_1_468F023360AGGAMAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVAPTQGQTFLVPNFAPITYQDYNANGTGGTFGTGNAVVQNPSLGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPSNLFYTQTPADGFPR
Ga0335054_0085050_497_1276F028717AGGAMDQTSSIVGNGQATGTAQDHASGEAGEQNVNPGAIRKSTTQSLLNAMSNASGTQFQSVEDALAFMARVGAQSNNGGNVQPVEQPKQQSNGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDRFDTDLVDYALNKVKNNIQWNDDGSYAIVNQKGQERYGSDGMPLTIQGLVQEVAQGNPKLLRQSNANSGSGLRPGQGSFTGALEETIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSASVSNSSRKVL
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