Scaffold Ga0335054_0102699

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335054_0102699

Scaffold Ga0335054_0102699

Overview

Basic Information
Taxon OID	3300034119 Open in IMG/M
Scaffold ID	Ga0335054_0102699 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1760
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F023834	Metagenome	208	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335054_0102699_1256_1540	F095162	GGAGG	MDNNKRMASAAKQAVYYRNYRRARDRALVKLAQAYPDTYKELLEKEKVSDEQEGKAWIDLNGTTVAPRIVARAKARGITLAQADTNQGNNGGEA
Ga0335054_0102699_60_200	F005558	GGAG	MNQESMSWSEIAELTHATQVERFNFCTCEDNEGNENPYSDCPKEGK
Ga0335054_0102699_775_942	F023834	AGGAGG	MNKEYWQAKAELCRDLALIQIEDEDTEKEAGMNLMRMTYALSMVDVYSEGKGENE

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