NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370479_0003766

Scaffold Ga0370479_0003766


Overview

Basic Information
Taxon OID3300034123 Open in IMG/M
Scaffold IDGa0370479_0003766 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3173
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9141Long. (o)-147.8348Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022683Metagenome / Metatranscriptome213N
F041288Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0370479_0003766_1165_1716F041288N/AMPKGVSTMANQKTDHRIPVTLATILIVSAVLLMSVWAFAATMLNSRQLSTEQTLKGSTGSEKFNTLRFETYGGQPEYRLIGYFLYKDGVRVSGDGPQLEPIGKLSLNEVFADQERIAKAKFYSPSKLIIREIIRDNSVIGYAVSDLKMEITLWDKTTDPSSISLELRFKDLQAKGERYYGGPR
Ga0370479_0003766_2288_2905F022683GAGMSDNMKPVADFYAKWSKDSFDMMSKGMTTYNKMSRGWTDVAEGSSGEKPDDMLKKWGDAFSGSYNDLYEMYTQPFKKFGAGQAPGKEAWEEAFAKWQKMFTSMPAGSAPTAAPEEFVNFSKNWFEGYAKVWQTWLESVQKMGDACKTAAGEGEKPRAAMSDVSEISDRFMKEWSAFVSEQAQSFFALWKSRLPAEKKEPKKAKKE
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