NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0370484_0077644

Scaffold Ga0370484_0077644


Overview

Basic Information
Taxon OID3300034125 Open in IMG/M
Scaffold IDGa0370484_0077644 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)850
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9095Long. (o)-147.9448Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030530Metagenome / Metatranscriptome185Y
F085254Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0370484_0077644_485_823F030530AGGMLSTNAYEKGESKLLNSTDVLGSIRDLILHLHRNNAMQAESILTDVAGYLKGVMQSGADPGSIDMLRTQQTMFAIDEVRMLLSQRDFDGAAVAARDAAKEWRQQPASGAARE
Ga0370484_0077644_61_333F085254AGGMSSWPEDFSTCSLKEVLGWQAENRAWNKELRLKTNSLVNSRLAKNITQDDYLATRKLVHEDAAECRRRANILDAQITRRTVGPMSRESFR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.