NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370484_0120712

Scaffold Ga0370484_0120712


Overview

Basic Information
Taxon OID3300034125 Open in IMG/M
Scaffold IDGa0370484_0120712 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)692
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9095Long. (o)-147.9448Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035428Metagenome / Metatranscriptome172N
F043558Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0370484_0120712_352_675F035428N/AVLDWSRTVLALRGRSIEGPNGVSGKTAEFVDTIFGDTGLVMTPAQAPAFFARSSSWRCTGCGKVHVFEQLVPLSQASPCSCASIEFEPQRDLAFSWDQSPRLVHSVN
Ga0370484_0120712_89_250F043558GGCGGMSRFAETHPQVYSREDLAEQEAKRRAVVFGLMGALISVMLTIGAIASLFMVLG

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