NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370490_0008772

Scaffold Ga0370490_0008772


Overview

Basic Information
Taxon OID3300034128 Open in IMG/M
Scaffold IDGa0370490_0008772 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3522
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9144Long. (o)-147.8354Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041295Metagenome160Y
F052452Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0370490_0008772_2626_2865F041295GAGGMRIKHDTVRKAGRPPGGVDGQRVRDYPQVSIRVPPKLHAQLAALTRTTGLSRLEIFIRAIDCYESSLRIQRRRQRRKAA
Ga0370490_0008772_2974_3465F052452GGAMKKVLALLVVAACALPVFAGAQQADNAKILQMFSANTRADWGNLQVILLNDRTVEALFGASPAKAAFRTKARMTSVFFVQGTANKEFEFKPEVTATQKGETLPGKVTPMKNFAGGKVAKGEQMQGLVEFAKKLDLYESFKVTVAGHAVDFNFNEDDVRDYGNR
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