NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370493_0018870

Scaffold Ga0370493_0018870


Overview

Basic Information
Taxon OID3300034129 Open in IMG/M
Scaffold IDGa0370493_0018870 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2054
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9096Long. (o)-147.9451Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009755Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0370493_0018870_428_1474F009755AGCAGMCVTGVSGLQAGPHAATLAVVMTNDPVSNQIKVYDVGTRALLQTLSTHGKGGVGGNARGVKQYEGELFAVVNNGSNSVAVYRRDGNGLKFDKLVTTTSAPVSVDFGNDHMYVAGATTVDSFVVHRNTVEWMDGSAWLELAGGGAPANGSTAQVGVVDEQRLLVTIKTDPDPGTVDVVPLHHGAVTGAAPAAVSAPTGTLTPFGFSVYPDGTAVITLAHSSQDGLFRNGAFTSVIGAGQAAPCWMTKAGKYVFTANTGSKTISRLIGTGNNLFVDSLVAATITTGGAPSDIDSSKGVLGVIDHVAGQSHLSLFAYNTFGELTANGAPISLGVPNANGVAIMAPPDRDEY
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