NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370494_011408

Scaffold Ga0370494_011408


Overview

Basic Information
Taxon OID3300034130 Open in IMG/M
Scaffold IDGa0370494_011408 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2321
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9149Long. (o)-147.8357Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000132Metagenome / Metatranscriptome1972Y
F018261Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0370494_011408_398_574F018261N/AMEEGSEVELVLILPPELTSGEKCWVCCQATIVRVEEEGPQFGIAAKIQRMDILPELSV
Ga0370494_011408_789_1130F000132AGGCGGMLLEKLTAGVVQVQTPIGPRFVMPSFVQRIYLIWMFRNFPILPHAVLSARQQRLIDRMCSEQRFASMAYADGMDQAPVIGTVEHRPPMGAEQLPARRPMATEAGMPAEVRQRS

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