NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334915_000022

Scaffold Ga0334915_000022


Overview

Basic Information
Taxon OID3300034132 Open in IMG/M
Scaffold IDGa0334915_000022 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 11HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78189
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (67.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002483Metagenome / Metatranscriptome555Y
F017066Metagenome / Metatranscriptome243Y
F055613Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0334915_000022_10258_10395F017066GGCGGVILPFAHHSALVALPVFAPALVIILGLLAYRRRERRRWEQEEAQG
Ga0334915_000022_10457_10816F002483GAGMERLRQLPVFAGGPLAERRPQLKVRRARQRPNRLGFAVPSELRLSVTAYPGIRRGDVLETLLHELVHLHVGRAPEAHGWHGPTFKRTLSQAMREAYGVTIPTPRASLHGPYAEAIEATA
Ga0334915_000022_28927_29367F055613GAGMTPKSCFPERSVFEPAARVLGAAMKPGSRETIPTISEVVREATAICDPEGTDTATIGLFESFEDDDRPTTAAEDLKGELLSTVRGIDPEGDNPAALAAAAAAVWLATNPSQADNGDHVLREGSRLVFEGNPPEPVAEWLAARGIDL
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