NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334915_001202

Scaffold Ga0334915_001202


Overview

Basic Information
Taxon OID3300034132 Open in IMG/M
Scaffold IDGa0334915_001202 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 11HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3791
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011333Metagenome / Metatranscriptome292Y
F021854Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0334915_001202_1138_1341F021854AGGAGGMVLLACPCAEGGDIWAEFWWVDQGYRWVFFDDEETSETFSEQVTHCPGCRRQLERKNMRTVSSLVRR
Ga0334915_001202_2987_3292F011333AGGAGGMLQTRKSSPPAGVPDALTGTARHDVTEVLLGVLRSIEPYEACILEAERDGDLEVAAFLRELRRQDIARAREATRLLKRSLERAKLNVVEMGEVHVELSVGS

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