NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334915_048412

Scaffold Ga0334915_048412


Overview

Basic Information
Taxon OID3300034132 Open in IMG/M
Scaffold IDGa0334915_048412 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 11HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016368Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0334915_048412_107_319F016368AGGAGGMSGLVVLKAHKVNKVLPPGYRVDHNPDVAVLRRPDGSVVAYFPIWTMSPERILREAERDLASGHLAIEDH
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