NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334916_021214

Scaffold Ga0334916_021214


Overview

Basic Information
Taxon OID3300034133 Open in IMG/M
Scaffold IDGa0334916_021214 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 12HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056885Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0334916_021214_1_786F056885N/APYLRWFLEYFVIHHIGRSLDVLNRRFYAIAAVSDDPDANRTNRDTVKLYQQSLPRLPYRLLVFVAVLAALVIALPLQAFGNAFYVLDLIGAMLRSDVGYVGRSLQGNELGPTVRSIIVLLIGFIVVAGLMTSPFGLKRILFNLHPWTKDRLDSTAARGHGFRAEGLYALEDSVFEEVGIRRPHEGRWDLAFQTFLLSFLLVFGLLMAGLTLVILMSWNVNLNLDTGGSAEVHFYLPVVSWVYYALFTGLVLVAFVLLLRRLV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.